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2.
Evol Lett ; 4(5): 430-443, 2020 Oct.
Artigo em Inglês | MEDLINE | ID: mdl-33014419

RESUMO

The study of local adaptation in the presence of ongoing gene flow is the study of natural selection in action, revealing the functional genetic diversity most relevant to contemporary pressures. In addition to individual genes, genome-wide architecture can itself evolve to enable adaptation. Distributed across a steep thermal gradient along the east coast of North America, Atlantic silversides (Menidia menidia) exhibit an extraordinary degree of local adaptation in a suite of traits, and the capacity for rapid adaptation from standing genetic variation, but we know little about the patterns of genomic variation across the species range that enable this remarkable adaptability. Here, we use low-coverage, whole-transcriptome sequencing of Atlantic silversides sampled along an environmental cline to show marked signatures of divergent selection across a gradient of neutral differentiation. Atlantic silversides sampled across 1371 km of the southern section of its distribution have very low genome-wide differentiation (median F ST = 0.006 across 1.9 million variants), consistent with historical connectivity and observations of recent migrants. Yet almost 14,000 single nucleotide polymorphisms (SNPs) are nearly fixed (F ST > 0.95) for alternate alleles. Highly differentiated SNPs cluster into four tight linkage disequilibrium (LD) blocks that span hundreds of genes and several megabases. Variants in these LD blocks are disproportionately nonsynonymous and concentrated in genes enriched for multiple functions related to known adaptations in silversides, including variation in lipid storage, metabolic rate, and spawning behavior. Elevated levels of absolute divergence and demographic modeling suggest selection maintaining divergence across these blocks under gene flow. These findings represent an extreme case of heterogeneity in levels of differentiation across the genome, and highlight how gene flow shapes genomic architecture in continuous populations. Locally adapted alleles may be common features of populations distributed along environmental gradients, and will likely be key to conserving variation to enable future responses to environmental change.

3.
Science ; 365(6452): 487-490, 2019 08 02.
Artigo em Inglês | MEDLINE | ID: mdl-31371613

RESUMO

Humans cause widespread evolutionary change in nature, but we still know little about the genomic basis of rapid adaptation in the Anthropocene. We tracked genomic changes across all protein-coding genes in experimental fish populations that evolved pronounced shifts in growth rates due to size-selective harvest over only four generations. Comparisons of replicate lines show parallel allele frequency shifts that recapitulate responses to size-selection gradients in the wild across hundreds of unlinked variants concentrated in growth-related genes. However, a supercluster of genes also rose rapidly in frequency and dominated the evolutionary dynamic in one replicate line but not in others. Parallel phenotypic changes thus masked highly divergent genomic responses to selection, illustrating how contingent rapid adaptation can be in the face of strong human-induced selection.


Assuntos
Adaptação Fisiológica/genética , Evolução Biológica , Pesqueiros , Peixes/anatomia & histologia , Peixes/genética , Atividades Humanas , Seleção Genética , Animais , Frequência do Gene , Genoma , Genômica , Humanos , Desequilíbrio de Ligação , Fenótipo , Polimorfismo de Nucleotídeo Único , População
4.
Can J Fish Aquat Sci ; 74(7): 1009-1015, 2017 Jul.
Artigo em Inglês | MEDLINE | ID: mdl-28701819

RESUMO

Human exposure to the neurotoxic methylmercury (MeHg) occurs primarily via the consumption of marine fish, but the processes underlying large-scale spatial variations in fish MeHg concentrations [MeHg], which influence human exposure, are not sufficiently understood. We used the Atlantic silverside (Menidia menidia), an extensively studied model species and important forage fish, to examine latitudinal patterns in total Hg [Hg] and [MeHg]. Both [Hg] and [MeHg] significantly increased with latitude (0.014 and 0.048 µg MeHg g-1 dw per degree of latitude in juveniles and adults, respectively). Four known latitudinal trends in silverside traits help explain these patterns: latitudinal increase in MeHg assimilation efficiency, latitudinal decrease in MeHg efflux, latitudinal increase in weight loss due to longer and more severe winters, and latitudinal increase in food consumption as an adaptation to decreasing length of the growing season. Given the absence of a latitudinal pattern in particulate MeHg, a diet proxy for zooplanktivorous fish, we conclude that large-scale spatial variation in growth is the primary control of Hg bioaccumulation in this and potentially other fish species.

5.
J Clin Imaging Sci ; 7: 1, 2017.
Artigo em Inglês | MEDLINE | ID: mdl-28217404

RESUMO

OBJECTIVE: To evaluate our initial experience with a cone-beam breast computed tomography (BCT)-guided breast biopsy system for lesion retrieval in phantom studies for use with a cone-beam BCT imaging system. MATERIALS AND METHODS: Under the Institutional Review Board approval, a phantom biopsy study was performed using a dedicated BCT-guided biopsy system. Fifteen biopsies were performed on each of the small, medium, and large anthropomorphic breast phantoms with both BCT and stereotactic guidance for comparison. Each set of the 45 phantoms contained masses and calcification clusters of varying sizes. Data included mass/calcium retrieval rate and dose and length of procedure time for phantom studies. RESULTS: Phantom mass and calcium retrieval rate were 100% for BCT and stereotactic biopsy. BCT dose for small and medium breast phantoms was found to be equivalent to or less than the corresponding stereotactic approach. Stereotactic-guided biopsy dose was 34.2 and 62.5 mGy for small and medium breast phantoms, respectively. BCT-guided biopsy dose was 15.4 and 30.0 mGy for small and medium breast phantoms, respectively. Both computed tomography biopsy and stereotactic biopsy study time ranged from 10 to 20 min. CONCLUSION: Initial experience with a BCT-guided biopsy system has shown to be comparable to stereotactic biopsy in phantom studies with equivalent or decreased dose.

6.
Genome Announc ; 4(4)2016 Aug 18.
Artigo em Inglês | MEDLINE | ID: mdl-27540050

RESUMO

Bacteriophages Phinally and Vivi2 were isolated from soil from Pittsburgh, Pennsylvania, USA, using host Gordonia terrae 3612. The Phinally and Vivi2 genomes are 59,265 bp and 59,337 bp, respectively, and share sequence similarity with each other and with GTE6. Fewer than 25% of the 87 to 89 putative genes have predictable functions.

7.
Evolution ; 69(8): 2187-95, 2015 Aug.
Artigo em Inglês | MEDLINE | ID: mdl-26177746

RESUMO

The Atlantic silverside, Menidia menidia (Pisces: Atherinidae), exhibits an exceptionally high level of clinal variation in sex determination across its geographic range. Previous work suggested linear changes in the level of temperature-dependent sex determination (TSD) with increasing latitude. Based on comparisons at 31 sites encompassing the entire species' range, we find that the change in level of TSD with latitude is instead highly nonlinear. The level of TSD is uniformly high in the south (Florida to New Jersey), then declines rapidly into the northern Gulf of Maine where genotypic sex determination (GSD) predominates and then rebounds to moderate levels of TSD in the northern-most populations of the Gulf of St. Lawrence. Major latitudinal breakpoints occur in central New Jersey (40(o)N) and the northern Gulf of Maine (44(o)N). No populations display pure TSD or GSD. Length of the growing season is the likely agent of selection driving variation in TSD with a threshold at 210 days. Because gene flow among populations is high, such distinct patterns of geographic variation in TSD/GSD are likely maintained by contemporary selection thereby demonstrating the adaptive fine tuning of sex determining mechanisms.


Assuntos
Smegmamorpha/fisiologia , Animais , Oceano Atlântico , Ecossistema , Feminino , Geografia , Masculino , Estações do Ano , Processos de Determinação Sexual , Diferenciação Sexual , Smegmamorpha/genética , Temperatura
8.
Eur J Radiol ; 84(1): 48-53, 2015 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-25439008

RESUMO

OBJECTIVE: This pilot study was to evaluate cone beam breast computed tomography (CBBCT) with multiplanar and three dimensional (3D) visualization in differentiating breast masses in comparison with two-view mammograms. METHODS: Sixty-five consecutive female patients (67 breasts) were scanned by CBBCT after conventional two-view mammography (Hologic, Motarget, compression factor 0.8). For CBBCT imaging, three hundred (1024 × 768 × 16b) two-dimensional (2D) projection images were acquired by rotating the x-ray tube and a flat panel detector (FPD) 360 degree around one breast. Three-dimensional CBBCT images were reconstructed from the 2D projections. Visage CS 3.0 and Amira 5.2.2 were used to visualize reconstructed CBBCT images. RESULTS: Eighty-five breast masses in this study were evaluated and categorized under the breast imaging reporting and data system (BI-RADS) according to plain CBBCT images and two-view mammograms, respectively, prior to biopsy. BI-RADS category of each breast was compared with biopsy histopathology. The results showed that CBBCT with multiplanar and 3D visualization would be helpful to identify the margin and characteristics of breast masses. The category variance ratios for CBBCT under the BI-RADS were 23.5% for malignant tumors (MTs) and 27.3% for benign lesions in comparison with pathology, which were evidently closer to the histopathology results than those of two-view mammograms, p value <0.01. With the receiver operating characteristic (ROC) curve analysis, the area under the curve (AUC) of CBBCT was 0.911, larger than that (AUC 0.827) of two-view mammograms, p value <0.01. CONCLUSION: CBBCT will be a distinctive noninvasive technology in differentiating and categorizing breast masses under BI-RADS. CBBCT may be considerably more effective to identify breast masses, especially some small, uncertain or multifocal masses than conventional two-view mammography.


Assuntos
Neoplasias da Mama/patologia , Mama/patologia , Tomografia Computadorizada de Feixe Cônico , Imageamento Tridimensional , Mamografia , Adulto , Idoso , Área Sob a Curva , Biópsia , Neoplasias da Mama/diagnóstico por imagem , Feminino , Humanos , Mamografia/métodos , Pessoa de Meia-Idade , Projetos Piloto , Curva ROC , Estudos Retrospectivos
9.
Breast J ; 20(4): 364-74, 2014.
Artigo em Inglês | MEDLINE | ID: mdl-24934253

RESUMO

To investigate the feasibility of noncontrast and contrast-enhanced cone beam breast Computed Tomography (CT) in demonstrating malignant breast lesions in the diagnostic setting. This Institutional Review Board approved, Health Information Portability and Accountability Act compliant, prospective study enrolled BI-RADS four and five patients from 2008 to 2010. Eighty-seven subjects had noncontrast breast CT, 42 had contrast-enhanced breast CT (CE-breast CT) with 70 pathologically confirmed cancer diagnoses. All 70 comprise the study cohort for noncontrast breast CT, and 23 who had CE-breast CT comprise the cohort for CE-breast CT. All had diagnostic work-up. Patient age, breast density, lesion size and characteristics, biopsy method, and core pathology were recorded. A Fisher's exact test was used to detect a difference in detectability. For agreement in size measurement between the imaging modalities, a paired t-test was employed. Reported p-values were based on 2-sided tests. Two one-sided tests were calculated to determine equivalence within ±0.3 cm at a 90% significance level. Noncontrast breast CT identified 67 of 70 malignant lesions, detected by diagnostic work-up. CE-breast CT identified 23 of 23 index malignant lesions and in addition, found three malignant lesions in three cases not previously detected. Noncontrast breast CT demonstrated the index lesion in 67 of 70 cases and CE-breast CT demonstrated the index lesion in all 23 cases. An additional three new malignant lesions not seen with conventional diagnostic work-up were detected. In this preliminary study, breast CT with or without contrast was shown to be accurate at identifying malignant breast lesions in the diagnostic setting.


Assuntos
Neoplasias da Mama/patologia , Tomografia Computadorizada por Raios X/métodos , Adulto , Idoso , Neoplasias da Mama/diagnóstico por imagem , Meios de Contraste , Desenho de Equipamento , Estudos de Viabilidade , Feminino , Humanos , Processamento de Imagem Assistida por Computador , Mamografia , Pessoa de Meia-Idade , Doses de Radiação , Tomografia Computadorizada por Raios X/instrumentação , Adulto Jovem
10.
Proc SPIE Int Soc Opt Eng ; 90382014 Apr 09.
Artigo em Inglês | MEDLINE | ID: mdl-29170583

RESUMO

Cone beam computed tomography (CBCT) has found use in mammography for imaging the entire breast with sufficient spatial resolution at a radiation dose within the range of that of conventional mammography. Recently, enhancement of lesion tissue through the use of contrast agents has been proposed for cone beam CT. This study investigates whether the use of such contrast agents improves the ability of texture features to differentiate lesion texture from healthy tissue on CBCT in an automated manner. For this purpose, 9 lesions were annotated by an experienced radiologist on both regular and contrast-enhanced CBCT images using two-dimensional (2D) square ROIs. These lesions were then segmented, and each pixel within the lesion ROI was assigned a label - lesion or non-lesion, based on the segmentation mask. On both sets of CBCT images, four three-dimensional (3D) Minkowski Functionals were used to characterize the local topology at each pixel. The resulting feature vectors were then used in a machine learning task involving support vector regression with a linear kernel (SVRlin) to classify each pixel as belonging to the lesion or non-lesion region of the ROI. Classification performance was assessed using the area under the receiver-operating characteristic (ROC) curve (AUC). Minkowski Functionals derived from contrast-enhanced CBCT images were found to exhibit significantly better performance at distinguishing between lesion and non-lesion areas within the ROI when compared to those extracted from CBCT images without contrast enhancement (p < 0.05). Thus, contrast enhancement in CBCT can improve the ability of texture features to distinguish lesions from surrounding healthy tissue.

11.
Phys Med Biol ; 58(22): 7921-36, 2013 Nov 21.
Artigo em Inglês | MEDLINE | ID: mdl-24165162

RESUMO

This study retrospectively analyzed the mean glandular dose (MGD) to 133 breasts from 132 subjects, all women, who participated in a clinical trial evaluating dedicated breast CT in a diagnostic population. The clinical trial was conducted in adherence to a protocol approved by institutional review boards and the study participants provided written informed consent. Individual estimates of MGD to each breast from dedicated breast CT was obtained by combining x-ray beam characteristics with estimates of breast dimensions and fibroglandular fraction from volumetric breast CT images, and using normalized glandular dose coefficients. For each study participant and for the breast corresponding to that imaged with breast CT, an estimate of the MGD from diagnostic mammography (including supplemental views) was obtained from the DICOM image headers for comparison. This estimate uses normalized glandular dose coefficients corresponding to a breast with 50% fibroglandular weight fraction. The median fibroglandular weight fraction for the study cohort determined from volumetric breast CT images was 15%. Hence, the MGD from diagnostic mammography was corrected to be representative of the study cohort. Individualized estimates of MGD from breast CT ranged from 5.7 to 27.8 mGy. Corresponding to the breasts imaged with breast CT, the MGD from diagnostic mammography ranged from 2.6 to 31.6 mGy. The mean (± inter-breast SD) and the median MGD (mGy) from dedicated breast CT exam were 13.9 ± 4.6 and 12.6, respectively. For the corresponding breasts, the mean (± inter-breast SD) and the median MGD (mGy) from diagnostic mammography were 12.4 ± 6.3 and 11.1, respectively. Statistical analysis indicated that at the 0.05 level, the distributions of MGD from dedicated breast CT and diagnostic mammography were significantly different (Wilcoxon signed ranks test, p = 0.007). While the interquartile range and the range (maximum-minimum) of MGD from dedicated breast CT was lower than diagnostic mammography, the median MGD from dedicated breast CT was approximately 13.5% higher than that from diagnostic mammography. The MGD for breast CT is based on a 1.45 mm skin layer and that for diagnostic mammography is based on a 4 mm skin layer; thus, favoring a lower estimate for MGD from diagnostic mammography. The median MGD from dedicated breast CT corresponds to the median MGD from four to five diagnostic mammography views. In comparison, for the same 133 breasts, the mean and the median number of views per breast during diagnostic mammography were 4.53 and 4, respectively. Paired analysis showed that there was approximately equal likelihood of receiving lower MGD from either breast CT or diagnostic mammography. Future work will investigate methods to reduce and optimize radiation dose from dedicated breast CT.


Assuntos
Mamografia/métodos , Medicina de Precisão/métodos , Doses de Radiação , Tomografia Computadorizada por Raios X/métodos , Feminino , Humanos , Processamento de Imagem Assistida por Computador , Estudos Retrospectivos
12.
Artigo em Inglês | MEDLINE | ID: mdl-23752122

RESUMO

Selection for growth-related traits in domesticated fishes often results in predictable changes within the growth hormone-insulin-like growth factor (GH-IGF-1) axis. Little is known about the mechanisms controlling changes in growth capacity resulting from fishery-induced evolution. We took advantage of a long-term study where Menidia menidia were selected for size at age over multiple generations to mimic fisheries-induced selection. This selection regime produced three populations with significant differences in intrinsic growth rate. These growth differences partially rebounded, but persisted even after selection was relaxed, resulting in fast, intermediate, and slow-growing lines. Plasma IGF-1 was measured in these populations as a potential target of selection on growth. IGF-1 was significantly correlated with current length and mass, and was positively correlated with growth rate (g d(-1)) in two lines, indicating it may be an appropriate indicator of growth capacity. The slow-growing line exhibited higher overall IGF-1 levels relative to the depressed IGF-1 seen in the fast-growing line, contrary to our prediction. We offer possible explanations for this unusual pattern and argue that somatic growth is likely to be under control of mechanism(s) downstream to IGF-1. IGF-1 provides an interesting basis for understanding endocrine control of growth in response to artificial selection and recovery.


Assuntos
Proteínas de Peixes/sangue , Peixes/crescimento & desenvolvimento , Fator de Crescimento Insulin-Like I/metabolismo , Animais , Cruzamento , Evolução Molecular , Feminino , Pesqueiros , Peixes/sangue , Masculino , Fenótipo , Aumento de Peso
13.
Evol Appl ; 5(7): 657-63, 2012 Nov.
Artigo em Inglês | MEDLINE | ID: mdl-23144653

RESUMO

The application of evolutionary principles to the management of fisheries has gained considerable attention recently. Harvesting of fish may apply directional or disruptive selection to key life-history traits, and evidence for fishery-induced evolution is growing. The traits that are directly selected upon are often correlated (genetically or phenotypically) with a suite of interrelated physiological, behavioral, and morphological characters. A question that has received comparatively little attention is whether or not, after cessation of fishery-induced selection, these correlated traits revert back to previous states. Here, we empirically examine this question. In experiments with the Atlantic silverside, Menidia menidia, we applied size-selective culling for five generations and then maintained the lines a further five generations under random harvesting. We found that some traits do return to preharvesting levels (e.g., larval viability), some partially recover (e.g., egg volume, size-at-hatch), and others show no sign of change (e.g., food consumption rate, vertebral number). Such correlations among characters could, in theory, greatly accelerate or decelerate the recovery of fish populations. These results may explain why some fish stocks fail to recover after fishing pressure is relaxed.

14.
Ecol Lett ; 15(6): 568-75, 2012 Jun.
Artigo em Inglês | MEDLINE | ID: mdl-22462779

RESUMO

The geography of adaptive genetic variation is crucial to species conservation yet poorly understood in marine systems. We analyse the spatial scale of genetic variation in traits that broadly display adaptation throughout the range of a highly dispersive marine species. We conducted common garden experiments on the Atlantic silverside, Menidia menidia, from 39 locations along its 3000 km range thereby mapping genetic variation for growth rate, vertebral number and sex determination. Each trait displayed unique clinal patterns, with significant differences (adaptive or not) occurring over very small distances. Breakpoints in the cline differed among traits, corresponding only partially with presumed eco-geographical boundaries. Because clinal patterns are unique to each selected character, neutral genes or those coding for a single character cannot serve as proxies for the genetic structure as a whole. Conservation plans designed to protect essential genetic subunits of a species will need to account for such complex spatial structures.


Assuntos
Adaptação Biológica , Peixes/genética , Variação Genética , Animais , Oceano Atlântico , Feminino , Peixes/crescimento & desenvolvimento , Crescimento/genética , Modelos Lineares , Masculino , América do Norte , Seleção Genética , Processos de Determinação Sexual , Coluna Vertebral
15.
Med Phys ; 39(1): 543-53, 2012 Jan.
Artigo em Inglês | MEDLINE | ID: mdl-22225324

RESUMO

PURPOSE: This research is designed to develop and evaluate a flat-panel detector-based dynamic cone beam CT system for dynamic angiography imaging, which is able to provide both dynamic functional information and dynamic anatomic information from one multirevolution cone beam CT scan. METHODS: A dynamic cone beam CT scan acquired projections over four revolutions within a time window of 40 s after contrast agent injection through a femoral vein to cover the entire wash-in and wash-out phases. A dynamic cone beam CT reconstruction algorithm was utilized and a novel recovery method was developed to correct the time-enhancement curve of contrast flow. From the same data set, both projection-based subtraction and reconstruction-based subtraction approaches were utilized and compared to remove the background tissues and visualize the 3D vascular structure to provide the dynamic anatomic information. RESULTS: Through computer simulations, the new recovery algorithm for dynamic time-enhancement curves was optimized and showed excellent accuracy to recover the actual contrast flow. Canine model experiments also indicated that the recovered time-enhancement curves from dynamic cone beam CT imaging agreed well with that of an IV-digital subtraction angiography (DSA) study. The dynamic vascular structures reconstructed using both projection-based subtraction and reconstruction-based subtraction were almost identical as the differences between them were comparable to the background noise level. At the enhancement peak, all the major carotid and cerebral arteries and the Circle of Willis could be clearly observed. CONCLUSIONS: The proposed dynamic cone beam CT approach can accurately recover the actual contrast flow, and dynamic anatomic imaging can be obtained with high isotropic 3D resolution. This approach is promising for diagnosis and treatment planning of vascular diseases and strokes.


Assuntos
Artérias Carótidas/diagnóstico por imagem , Angiografia Cerebral/instrumentação , Angiografia Cerebral/veterinária , Artérias Cerebrais/diagnóstico por imagem , Tomografia Computadorizada de Feixe Cônico/instrumentação , Tomografia Computadorizada de Feixe Cônico/veterinária , Animais , Cães , Desenho de Equipamento , Análise de Falha de Equipamento , Intensificação de Imagem Radiográfica/instrumentação , Intensificação de Imagem Radiográfica/métodos , Reprodutibilidade dos Testes , Sensibilidade e Especificidade
16.
Artigo em Inglês | MEDLINE | ID: mdl-26778877

RESUMO

Differential phase contrast (DPC) imaging, which utilizes phase shift information of X-ray, has the potential of dramatically increasing the contrast in biological sample imaging compared to attenuation-based method that relies on X-ray absorption information, since the X-ray phase is much more sensitive than the attenuation during transmission. In a DPC imaging system, the phase stepping method is widely used to obtain DPC images: at each angle the phase grating is shifted incrementally to produce a set of images and then the so obtained images are used to retrieve DPC image. However, DPC imaging requires a high mechanical precision to perform phase stepping, which is generally one order higher than the period of phase grating. Given that phase grating period is generally 2-4 um, the requirement of mechanical accuracy and stability are very demanding (<0.5um) and difficult to meet in a system with rotating gantry. In this paper, we present a method that is able to greatly relax the requirement of mechanical accuracy and stability by stepping the source grating rather than the analyzer grating. This method is able to increase the system's mechanical tolerance without compromising image quality and make it feasible to install the system on a rotating gantry to perform differential phase-contrast cone beam CT (DPC-CBCT). It is also able to increase the grating shifting precision and as a result improve the reconstructed image quality. Mechanical tolerance investigation and image quality investigation at different phase stepping schemes and different dose levels will be carried out on both the original modality and the new modality, the results will be evaluated and compared. We will deliberately create random mechanical errors in phase stepping and evaluate the resulting DPC images and DPC-CBCT reconstructions. The contrast, noise level and sharpness will be evaluated to assess the influence of mechanical errors. By stepping the source grating, the system is expected to tolerate an error of 6-7 times bigger than that with analyzer grating stepping.

17.
Proc SPIE Int Soc Opt Eng ; 83132012 Feb 12.
Artigo em Inglês | MEDLINE | ID: mdl-24386537

RESUMO

Differential phase contrast technique could be the next breakthrough in the field of CT imaging. While traditional absorption-based X-ray CT imaging is inefficient at differentiating soft tissues, phase-contrast technique offers great advantage as being able to produce higher contrast images utilizing the phase information of objects. Our long term goal is to develop a gantry-based hospital-grade X-ray tube differential phase contrast cone-beam CT (DPC-CBCT) technology which is able to achieve higher contrast noise ratio (CNR) in soft tissue imaging without increasing the dose level. Based on the micro-focus system built last year, a bench-top hospital-grade X-ray tube DPC-CBCT system is designed and constructed. The DPC-CBCT system consists of an X-ray source, i.e. a hospital-grade X-ray tube and a source grating, a high-resolution detector, a rotating phantom holder, a phase grating and an analyzer grating. Three-dimensional (3-D) phase-coefficients are reconstructed, providing us with images enjoying higher CNR than, yet equivalent dose level to, a conventional CBCT scan. Three important aspects of the system are investigated: a) The The system's performance in term of CNR of the reconstruction image with regard to dose levels, b) the impacts of different phase stepping schemes, i.e. 5 steps to 8 steps, in term of CNR on the reconstruction images, and c) the influence of magnification or position of the phantom on image quality, chiefly CNR. The investigations are accomplished via phantom study.

18.
Proc SPIE Int Soc Opt Eng ; 8313: 83132R, 2012.
Artigo em Inglês | MEDLINE | ID: mdl-23378889

RESUMO

The phase stepping algorithm is commonly used for phase retrieval in grating-based differential phase-contrast (DPC) imaging, which requires multiple intensity images to compute one DPC image. It is not efficient for data acquisition, especially in the case of dynamic imaging using either DPC imaging or DPC-based come beam CT (DPC-CBCT) imaging. A Fourier transform-based approach has been developed for fringe pattern analysis in optics, and it was recently implemented into a synchrotron-based DPC tomography system. In this research, this approach is further developed for a bench-top DPC-CBCT imaging system with a hospital-grade x-ray tube. The key idea is to separate carrier fringes and object information in Fourier domain of the interferogram and to reconstruct the differentiated phase information using the object information. Only one interferogram is required for phase retrieval at a cost of spatial resolution. The fringes of moiré patterns are used as the carrier fringes, and a phantom is scanned to evaluate the approach. Various interferograms with different carrier fringe frequencies are investigated and the reconstruction image quality is evaluated in terms of contrast, noise and sharpness. The results indicated that the DPC images can be effectively retrieved using the Fourier transform-based approach and the reconstructed phase coefficient showed better contrast compared to that of attenuation-based contrast. The spatial resolution is acceptable in the phantom studies although it is not as good as the results of phase-stepping approach. The Fourier transform-based phase retrieval approach is able to greatly simplify data acquisition, to improve the temporal resolution and to make it possible for dynamic DPC-CBCT imaging. It is promising for perfusion imaging where spatial resolution is not a concern.

19.
J Xray Sci Technol ; 19(1): 91-109, 2011.
Artigo em Inglês | MEDLINE | ID: mdl-21422591

RESUMO

In flat-panel detector-based cone beam CT breast imaging (CBCTBI) systems, scattering is an important factor that degrades image quality. It is not practical to measure the scattering profiles of a breast for all view angles in a patient study, but it is possible to develop a method to estimate the scattering profiles based on information acquired from breast phantom studies. A new scattering correction method is proposed for clinical CBCTBI in this study. The scattering profiles of three anthropomorphic uncompressed breast phantoms of different sizes were thoroughly investigated, and the results indicated that though phantom size differed, the scattering profiles were mainly determined by local breast diameters, which are the approximate diameters of coronal slices that are perpendicular to the nipple-to-chestwall direction. Thus for scattering correction purposes it is possible to establish a relationship between location breast diameters and local scattering profiles, namely the fitted smooth curves of scatter-to-primary ratios (SPR) and normalized scattered radiations (NSR). In clinical CBCTBI studies, after the local breast diameters are sampled and measured on projection images, the scattering image for every projection image can be generated based on the established relationship, and the projection images can be corrected using either the SPR based method or the NSR based method. Phantom studies and clinical studies showed that both the SPR and NSR methods are able to correct cupping artifacts and reduce reconstruction error. The SPR method does not increase tissue contrast or noise while the NSR method increases both.


Assuntos
Neoplasias da Mama/diagnóstico por imagem , Tomografia Computadorizada de Feixe Cônico/métodos , Imagens de Fantasmas , Interpretação de Imagem Radiográfica Assistida por Computador/métodos , Artefatos , Fenômenos Biofísicos , Simulação por Computador , Feminino , Humanos , Espalhamento de Radiação , Ecrans Intensificadores para Raios X
20.
Proc Biol Sci ; 278(1716): 2265-73, 2011 Aug 07.
Artigo em Inglês | MEDLINE | ID: mdl-21208956

RESUMO

How organisms may adapt to rising global temperatures is uncertain, but concepts can emerge from studying adaptive physiological trait variations across existing spatial climate gradients. Many ectotherms, particularly fish, have evolved increasing genetic growth capacities with latitude (i.e. countergradient variation (CnGV) in growth), which are thought to be an adaptation primarily to strong gradients in seasonality. In contrast, evolutionary responses to gradients in mean temperature are often assumed to involve an alternative mode, 'thermal adaptation'. We measured thermal growth reaction norms in Pacific silverside populations (Atherinops affinis) occurring across a weak latitudinal temperature gradient with invariant seasonality along the North American Pacific coast. Instead of thermal adaptation, we found novel evidence for CnGV in growth, suggesting that CnGV is a ubiquitous mode of reaction-norm evolution in ectotherms even in response to weak spatial and, by inference, temporal climate gradients. A novel, large-scale comparison between ecologically equivalent Pacific versus Atlantic silversides (Menidia menidia) revealed how closely growth CnGV patterns reflect their respective climate gradients. While steep growth reaction norms and increasing growth plasticity with latitude in M. menidia mimicked the strong, highly seasonal Atlantic coastal gradient, shallow reaction norms and much smaller, latitude-independent growth plasticity in A. affinis resembled the weak Pacific latitudinal temperature gradient.


Assuntos
Adaptação Biológica/fisiologia , Evolução Biológica , Mudança Climática , Smegmamorpha/crescimento & desenvolvimento , Temperatura , Animais , Oceano Atlântico , Oceano Pacífico , Estações do Ano , Especificidade da Espécie
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